extract_otu_tree

Extract OTU tree.

Extract Taxa tree.

Extract ref sequence.

Usage

extract_otu_tree(object)

extract_taxa_tree(object)

extract_ref_seq(object)

Arguments

object

(required) microbiome_dataset class object.

Value

A treedata

A treedata

A xstringset

Author

Xiaotao Shen xiaotao.shen@outlook.com

Examples

data("global_patterns", package = "microbiomedataset")

otu_tree <- extract_otu_tree(global_patterns)
class(otu_tree)
#> [1] "treedata"
#> attr(,"package")
#> [1] "tidytree"
data("global_patterns", package = "microbiomedataset")

taxa_tree <- extract_taxa_tree(global_patterns)
class(taxa_tree)
#> [1] "treedata"
#> attr(,"package")
#> [1] "tidytree"
data("global_patterns", package = "microbiomedataset")

ref_seq <- extract_ref_seq(global_patterns)
class(ref_seq)
#> [1] "NULL"