Barplot based on ggplot2

Barplot based on ggplot2

plot_barplot(
  object,
  fill = c("Kingdom", "Phylum", "Class", "Order", "Family", "Genus", "Species"),
  top_n = 5,
  show.legend,
  what = c("sum_intensity", "mean_intensity", "median_intensity"),
  na.rm = TRUE,
  relative = TRUE,
  re_calculate_relative = FALSE,
  x = "sample_id",
  color = "balck",
  facet_grid,
  ...
)

# S3 method for microbiome_dataset
plot_barplot(
  object,
  fill = c("Kingdom", "Phylum", "Class", "Order", "Family", "Genus", "Species"),
  top_n = 5,
  show.legend,
  what = c("sum_intensity", "mean_intensity", "median_intensity"),
  na.rm = TRUE,
  relative = TRUE,
  re_calculate_relative = FALSE,
  x = "sample_id",
  color = "balck",
  facet_grid,
  ...
)

Arguments

object

microbiome_dataset

fill

fill for barplot

top_n

default is 5

show.legend

show.legend or not

what

which you want to mutate

na.rm

na.rm

relative

relative intensity or not.

re_calculate_relative

re-calculate relative abundance or not.

x

x axis

color

color for barplot

facet_grid

facet_grid

...

other params

Value

ggplot2 class object