Extract Network Results — extract_network_result • microbiomedataset

Return the node and edge tables from a microbe_metabolite_network object.

Usage

extract_network_result(object, what = c("both", "nodes", "edges"))

Arguments

object: A microbe_metabolite_network object.
what: Which part of the result to extract.

Value

A data.frame or named list of data.frames.

Examples

data("demo_crossomics", package = "microbiomedataset")

x <- calculate_correlation(
  microbiome_data = demo_crossomics$microbiome_data,
  metabolome_data = demo_crossomics$metabolome_data,
  sample_link = demo_crossomics$sample_link,
  metabolome_transform = "none"
)
x <- build_correlation_network(x, min_abs_correlation = 0.2, max_q_value = 1)
names(extract_network_result(x, what = "both"))
#> [1] "nodes" "edges"