Filter Samples by Library Size
Usage
filter_samples(object, min_abundance = NULL, max_abundance = NULL)
Arguments
- object
A microbiome_dataset object.
- min_abundance
Minimum total abundance required to keep a sample.
- max_abundance
Maximum total abundance allowed to keep a sample.
Value
A microbiome_dataset object.
Examples
data("global_patterns", package = "microbiomedataset")
x <- filter_samples(global_patterns, min_abundance = 1000)
dim(x@expression_data)
#> [1] 19216 26
