Filter Samples by Library Size — filter_samples • microbiomedataset

Filter Samples by Library Size

Usage

filter_samples(object, min_abundance = NULL, max_abundance = NULL)

Arguments

object: A microbiome_dataset object.
min_abundance: Minimum total abundance required to keep a sample.
max_abundance: Maximum total abundance allowed to keep a sample.

Value

A microbiome_dataset object.

Examples

data("global_patterns", package = "microbiomedataset")

x <- filter_samples(global_patterns, min_abundance = 1000)
dim(x@expression_data)
#> [1] 19216    26