Import a QIIME2 Dataset as a microbiome_dataset — import_qiime2 • microbiomedataset

Import a QIIME2 Dataset as a microbiome_dataset

Usage

import_qiime2(
  feature_table,
  taxonomy = NULL,
  metadata = NULL,
  tree = NULL,
  ref_seq = NULL,
  ...
)

Arguments

feature_table: Feature table .qza path or loaded matrix-like object.
taxonomy: Optional taxonomy .qza path or data frame.
metadata: Optional sample metadata path or data frame.
tree: Optional tree .qza path, phylo, or treedata.
ref_seq: Optional sequence .qza path or DNAStringSet.
...: Passed to create_microbiome_dataset().

Value

A microbiome_dataset object.