Usage
melt_features(object, relative = FALSE, value_name = "abundance")
Arguments
- object
A microbiome_dataset object.
- relative
Should abundance be converted to relative abundance before
melting?
- value_name
Name of the abundance column in the output.
Value
A data frame in long format.
Examples
data("global_patterns", package = "microbiomedataset")
x <- melt_features(global_patterns)
head(x[, c("sample_id", "variable_id", "abundance")])
#> sample_id variable_id abundance
#> 1 CL3 549322 0
#> 2 CC1 549322 0
#> 3 SV1 549322 0
#> 4 M31Fcsw 549322 0
#> 5 M11Fcsw 549322 0
#> 6 M31Plmr 549322 0
