Plot Alpha Diversity — plot_alpha_diversity • microbiomedataset

Draw a lightweight plot for alpha diversity results.

Usage

plot_alpha_diversity(object, x = NULL, color_by = NULL)

Arguments

object: A microbiome_diversity object with type = "alpha".
x: Optional metadata column used on the x-axis.
color_by: Optional metadata column used for point color.

Value

A ggplot object.

Examples

data("global_patterns", package = "microbiomedataset")

x <- calculate_alpha_diversity(global_patterns, metric = "shannon")
p <- plot_alpha_diversity(x, x = "SampleType")
class(p)
#> [1] "ggplot2::ggplot" "ggplot"          "ggplot2::gg"     "S7_object"      
#> [5] "gg"