Plot Cross-Omics Integration — plot_crossomics_integration • microbiomedataset

Visualize sample coordinates from a crossomics_integration object and optionally overlay top microbiome/metabolome loading arrows.

Usage

plot_crossomics_integration(
  object,
  axes = c(1, 2),
  color_by = NULL,
  show_loading = FALSE,
  loading_block = c("both", "microbiome", "metabolome"),
  top_n = 10,
  loading_scale = 1
)

Arguments

object: A crossomics_integration object.
axes: Numeric vector of length 2 specifying plotted components.
color_by: Optional column name in sample_info.
show_loading: Should top feature loadings be displayed?
loading_block: Which loading block(s) should be displayed.
top_n: Number of features per block to plot when show_loading = TRUE.
loading_scale: Multiplier used to scale loading arrows.

Value

A ggplot object.