Plot a Network Module Summary

Summarize module sizes and block composition as a bar chart.

Usage

plot_module_summary(
  object,
  method = c("louvain", "walktrap"),
  value = c("n_nodes", "n_microbiome", "n_metabolome"),
  top_n = 15
)

Arguments

object

A microbe_metabolite_network object or a module summary table produced by summarise_network_modules().

method

Community detection method used when object is a network.

value

Summary metric displayed on the x-axis.

top_n

Maximum number of modules shown.

Value

A ggplot object.

Examples

data("demo_crossomics", package = "microbiomedataset")

correlation <- calculate_correlation(
  microbiome_data = demo_crossomics$microbiome_data,
  metabolome_data = demo_crossomics$metabolome_data,
  sample_link = demo_crossomics$sample_link,
  microbiome_rank = "Genus",
  metabolome_transform = "none"
)
network <- build_correlation_network(
  correlation,
  min_abs_correlation = 0.2,
  max_q_value = 1,
  top_n = 20
)
plot_module_summary(network)