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Plot Alpha Rarefaction Curves

Source: R/plot_microbiome_visualization.R
plot_rarefaction.Rd

Draw expected richness curves across sequencing depths.

Usage

plot_rarefaction(object, steps = 10, color_by = NULL)

Arguments

object

A microbiome_dataset object.

steps

Number of depth points used per sample.

color_by

Optional sample metadata column used for color.

Value

A ggplot object.

Examples

data("global_patterns", package = "microbiomedataset")

plot_rarefaction(global_patterns, steps = 8, color_by = "SampleType")