Plot Multiple Alpha Diversity Metrics — plot_richness • microbiomedataset

Draw a richness-style summary plot across multiple alpha diversity metrics.

Usage

plot_richness(
  object,
  metrics = c("observed", "shannon", "simpson", "pielou"),
  x = NULL,
  color_by = NULL
)

Arguments

object: A microbiome_dataset object.
metrics: Alpha diversity metrics to calculate.
x: Optional sample metadata column used on the x axis.
color_by: Optional sample metadata column used for color.

Value

A ggplot object.

Examples

data("global_patterns", package = "microbiomedataset")
plot_richness(global_patterns, x = "SampleType")