Plot an Ordination Scree Plot — plot_scree • microbiomedataset

Show explained variance across ordination axes.

Usage

plot_scree(
  object,
  method = c("PCA", "PCoA"),
  distance_method = c("bray", "jaccard", "euclidean"),
  top_n = 10
)

Arguments

object: A microbiome_ordination or microbiome_dataset object.
method: Ordination method used when object is a dataset.
distance_method: Distance method used when computing PCoA.
top_n: Number of axes displayed.

Value

A ggplot object.

Examples

data("global_patterns", package = "microbiomedataset")
plot_scree(run_ordination(global_patterns, method = "PCA"))