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Standardize Reaction Link Metadata

Source: R/utils_microbiome.R
standardize_reaction_link.Rd

Normalize a cross-omics reaction link table to the schema used by reaction-level mechanism summaries.

Usage

standardize_reaction_link(reaction_link)

Arguments

A reaction link table.

Value

A standardized reaction link table.

Examples

reaction_link <- data.frame(
  taxon_id = "Genus_A",
  metabolite_id = "M1",
  reaction_id = "R1"
)
standardize_reaction_link(reaction_link)
#>   taxon_id metabolite_id reaction_id reaction_name pathway_id pathway_name
#> 1  Genus_A            M1          R1          <NA>       <NA>         <NA>
#>   evidence_type compound_name annotation_level
#> 1 user_supplied          <NA>             <NA>