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Standardize Taxon-to-Pathway Link Metadata

Source: R/utils_microbiome.R
standardize_taxon_pathway_link.Rd

Normalize a taxon-to-pathway mapping table for pathway-level mechanism summarization.

Usage

standardize_taxon_pathway_link(taxon_pathway_link)

Arguments

A taxon-to-pathway link table.

Value

A standardized taxon-to-pathway link table.

Examples

taxon_pathway_link <- data.frame(
  taxon_id = "Genus_A",
  pathway_id = "pathway_1"
)
standardize_taxon_pathway_link(taxon_pathway_link)
#>   taxon_id pathway_id pathway_name reaction_id reaction_name evidence_type
#> 1  Genus_A  pathway_1         <NA>        <NA>          <NA> user_supplied