Skip to contents

Standardize Taxon-to-Reaction Link Metadata

Source: R/utils_microbiome.R
standardize_taxon_reaction_link.Rd

Normalize a taxon-to-reaction mapping table for reaction-level mechanism summarization.

Usage

standardize_taxon_reaction_link(taxon_reaction_link)

Arguments

A taxon-to-reaction link table.

Value

A standardized taxon-to-reaction link table.

Examples

taxon_reaction_link <- data.frame(
  taxon_id = "Genus_A",
  reaction_id = "R1"
)
standardize_taxon_reaction_link(taxon_reaction_link)
#>   taxon_id reaction_id reaction_name pathway_id pathway_name evidence_type
#> 1  Genus_A          R1          <NA>       <NA>         <NA> user_supplied