Calculate Taxon Prevalence across Samples
Usage
taxa_prevalence(object, detection = 0, proportion = FALSE)
Arguments
- object
A microbiome_dataset object.
- detection
Minimum abundance required to count as present.
- proportion
Return prevalence as a proportion instead of counts?
Value
A numeric vector named by variable_id.
Examples
data("global_patterns", package = "microbiomedataset")
x <- taxa_prevalence(global_patterns, detection = 0)
head(x)
#> 549322 522457 951 244423 586076 246140
#> 5 2 1 2 2 2
